Come back West, old man?

On March 30th, in plenty of time to avoid being taken for an April Fool’s joke, California Governor Gavin Newsome issued executive order N-39-20  https://www.gov.ca.gov/wp-content/uploads/2020/03/3.30.20-EO-N-39-20-text.pdf giving the Director of the Department of Consumer Affairs (DCA) the authority to waive professional licensing requirements for the healing arts boards under DCA during the COVID-19 State of Emergency.  Any medical professional (doctors, dentists, nurses, respiratory therapists, physical therapists, behavioral health scientists, pharmacists, EMTs) who have had an active California license within the previous 5 years but have let it lapse can renew their license without charge.  The license will be good for only 6 months (usual term of renewal is 2 years) and is contingent on registration with the new California Health Corps https://covid19.ca.gov/healthcorps/.  Promise to new Corps members is a salary (although the amount is never mentioned) and malpractice insurance.   Applicants can state regional preferences for posting, and will have their skill sets screened so as to match needs as best possible.  The main mission of this new army will be to staff an additional 50,000 hospital beds, now closed, but expected to be needed as the COVID-19 pandemic spreads.  The state has reported over 6,000 cases already, figuring that to be a gross underestimation due to spotty testing.  As of last Monday, 1432 cases were in hospital, over 600 of those in intensive care https://www.nytimes.com/2020/03/31/us/california-health-corps-newsom.html.  Today’s Johns Hopkins map https://coronavirus.jhu.edu/map.html shows 5,304 confirmed cases in Los Angeles alone.

The pool is deep.  Over 37,000 medical professionals had a California license sometime in the past 5 years but let it lapse.  I’m one of them.  I got a California Medical License in late 2016 in anticipation of my sabbatical at University of California at San Diego, which ran from January through the end of March.  When the time to renew came last year, I balked at paying the high fee ($820, more than twice what it costs in Michigan, which is good for twice as long).  When the post at UCSD did not materialize, and my medical career seemed destined to remain firmly planted in Michigan, one license seemed sufficient.  Even if I could secure a Corps posting in La Jolla, I think I’ll hold off on my return to the Golden State till the environment becomes less hazardous.   If I eventually feel moved to stand on the front lines in this battle, there will be opportunities within walking distance

Want a Z-Pac with that Plaquenil?

An article in the New York Times yesterday gave a face to a controversial treatment for COVID-19 that’s been the stuff of rumors for weeks https://www.nytimes.com/2020/04/02/technology/doctor-zelenko-coronavirus-drugs.html.  Dr. Zev Zelenko, primary care doctor to his community of 35,000 Hadassic Jews in Kiryas Joel, about an hour’s drive from Manhattan, has been treating even mild cases with not only Plaquenil, but adding in zinc supplements and azithromycin (the stuff in your Z-Pac).  Now doctors have been giving Z-Pacs to their patients with viral infections for years.  Thought leaders in infectious disease warn against the practice, as the drug has no anti-viral activity and indiscriminate antibiotic use can spread drug resistance.   Zinc is harmless, competes with viruses in some of the host proteins they try to hijack, and zinc lozenges are a staple in my medicine cabinet to pop in at the first sign of a scratchy throat.

Azithromycin is a popular, well known and well-studied antibiotic.  It was derived from erythromycin, another antibiotic in the macrolide class.  It prevents bacteria from growing by interfering with their protein synthesis. It binds to the 50S subunit of the bacterial ribosome and thus does not let bacterial messenger RNA latch on to the ribosmome and tell various amino acids to start hooking together into a new protein.  Macrolides have also been shown to have immune-modulating and anti-inflammatory effects. Morbidity and mortality caused by respiratory viral infections is associated more with an overexuberant host response, with the excessive elaboration of cytokines and immunopathologic host inflammatory responses, than with direct effects of the virus. Pre-clinical and clinical studies have shown that macrolides diminish the inflammatory response, attenuating extreme cytokine production and promote the induction of immune protein antibodies which may reduce the complications of respiratory viral infections. Given these properties, macrolides (e.g., azithromycin, clarithromycin, erythromycin, fidaxomicin, telithromycin) have been studied for their potential use as targeted therapy for a wide spectrum of viral respiratory infections including influenza.  Results from studies in these various diseases have been mixed.  There seems to be a positive influence on the course of kids with flu or respiratory syncytial virus (RSV, a common cause of pneumonia in kids), but not on adults with flu.

In the 2012 MERS epidemic in Saudi Arabia, caused by a coronavirus 87% identical to COVID-19, doctors used a lot of azithromycin, but in no consistent manner.  In a paper published just last year, 26 authors in service to the Saudi Clinical Trials Group looked back on outcomes of 349 critically ill MERS patients, which included 136 who had received macrolides (azithromycin the most common, used in 72%).  The group could find no evidence that antibiotics reduced 90 day mortality or shortened the duration that virus was shed by the patients.

While these results seem to put a damper on any enthusiasm for azithromycin in COVID-19, realize the Saudi patients were critically ill, and that might get a COVID-19 patient high dose steroids or even an interleukin-6 inhibitor, like Actemra.  Dr. Zelenko’s patients weren’t nearly as sick, and no doubt were grateful for any shortening of symptoms they thought his treatment was providing.  Did he keep some out of the ICU?  With the large population of new infected patients, a proper trial comparing Plaquenil alone to Plaquenil plus a Z-Pac, with monitoring of viral shedding as well as symptoms, seems eminently doable, especially with our huge medical research infrastructure.  Let’s get to it, Dr. Fauci!

PS. Why not?  Here’s the list of azithromycin side effects from one of the articles below: anorexia, dyspepsia, flatulence, dizziness, headache, drowsiness, convulsions, arthralgia, and disturbances in taste and smell; rarely constipation, hepatitis, hepatic failure, syncopeinsomnia, agitation, anxiety, astheniaparaesthesiahyperactivitythrombocytopeniahemolytic anemia, interstitial nephritis, acute renal failurephotosensitivity, tooth and tongue discoloration

references

Bakheit AHAl-Hadiya BMAbd-Elgalil AA..  Azithromycin. Profiles Drug Subst Excip Relat Methodol. 2014;39:1-40. doi: 10.1016/B978-0-12-800173-8.00001-5.

Arabi YM, Deeb AM, Al-Hameed F, Mandourah Y, Almekhlafi GA, Sindi AA, Al-Omari A, Shalhoub S, Mady A, Alraddadi B, Almotairi A, Al Khatib K, Abdulmomen A, Qushmaq I, Solaiman O, Al-Aithan AM, Al-Raddadi R, Ragab A, Al Harthy A, Kharaba A, Jose J, Dabbagh T, Fowler RA, Balkhy HH, Merson L, Hayden FG; Saudi Critical Care Trials group.  Macrolides in critically ill patients with Middle East Respiratory Syndrome.  Int J Infect Dis. 2019 Apr;81:184-190. doi: 10.1016/j.ijid.2019.01.041. Epub 2019 Jan 25.

Hello Plaquenil! You too, Aralen

On Sunday, the Food and Drug Administration (FDA) issued an Emergency Use Authorization (EUA) to the Health and Human Services’(HHS) Office of the Assistant Secretary for Preparedness and Response Biomedical Advanced Research and Development Authority (ASPAR’s BARDA) for hydroxychloroquine and chloroquine for coronavirus treatment. The agency allowed for the drugs to be “donated to the Strategic National Stockpile to be distributed and prescribed by doctors to hospitalized teen and adult patients with COVID-19, as appropriate, when a clinical trial is not available or feasible,” HHS announced https://www.hhs.gov/about/news/2020/03/29/hhs-accepts-donations-of-medicine-to-strategic-national-stockpile-as-possible-treatments-for-covid-19-patients.html that Sandoz had donated 30 million doses of hydroxychloroquine to the stockpile and Bayer donated 1 million doses of chloroquine.

From HHS’ announcement: “An  EUA may be issued if the FDA determines that, among other criteria, the known and potential benefits of the product, when used to diagnose, prevent, or treat the identified disease or condition, outweigh the known and potential risks of the product, and there are no adequate, approved, available alternatives. Emergency access to a medical product under an EUA is separate from use of a medical product under an investigational drug application.” Other than a requirement that doctors prescribing the drug be given a sheet explaining risks and drug interactions, there are no further restrictions on doctors. The donation of supplies by pharma merely eases the supply crunch but does not make the drugs free.

As of this Monday morning, the FDA had not yet mentioned this move on its site.

Thus, any doctor treating a patient with COVID-19 will be able to prescribe one of these drugs without fear of legal repercussions for use of an “unapproved drug”. News of the announcement came on Politico https://www.politico.com/news/2020/03/29/fda-emergency-authorization-anti-malaria-drug-155095, which of course tries to put a political spin on the move, which was championed by the White House and has no lack of detractors.

This is very good news, and only took 5 acronyms to explain. Good thing NASA isn’t handling the problem.

why rheumatology and, um, death?

I thought after all this coronavirus stuff, we needed a light break. As is often the case these days, this one was inspired by my high school English teacher Mrs. Pharriss. Towards the end of a long e-mail, she asked me:

“Did you have to deal with deaths of patients very often during your medical career?  How did you deal with it?  I should read more about your field—I think I have an old Merck Manual on a bookshelf somewhere—to understand the kinds of diseases you must have treated.  You’ve mentioned lupus, one other rather rare one that your high school friend had, of course, arthritis.  Why did you choose this area of medicine? “

To which I responded:

Dear teacher

Is this an essay assignment or a test you’ve given me?  These questions you’ve asked are very heavy and deep ones.  Let’s start with choice of rheumatology.  The subspecialty is a constant game of Trivial Pursuit and Clue.  I was introduced in second year of medical school when the local rheumatology faculty delivered us 2 series of lectures.  I was immediately fascinated by the weird array of strange and often rare diseases they looked after.  I had never heard anything like it.  I spent some time with the chief of rheumatology, Leif Sorensen  (what a name!) in my senior year, not only seeing some of these oddball diseases up close, but learning it was sometimes possible to do something about them.  It didn’t hurt that my dear grandma Slater had bad arthritis, boring old osteoarthritis of the knees (OAK), but maybe I yearned to be able to do something about that.  Curiously, much of my research effort early on at Michigan focused on OAK and my major procedural efforts, for which I became renowned, over the course of my career focused mainly on OAK.  Barnes provided plenty of distractions to do something else with my talents.  Pulmonary medicine was attractive, as the docs in that field were quite affable and we had fun at conferences.  Gastroenterology had its pull, as it does for many medical residents to this day, not for the prospect of doing high-paying procedures, but for the interesting disorders involving the liver and inflammation of the gastrointestinal tract.  I’d enjoyed  cardiology in med school, mainly the games of trying to sort out a patient’s heart problem by listening to the sounds it makes  and discerning perturbations in the heart’s electrical system by scrutinizing the squiggles on EKG paper; but the life and death heroics of the CCU were not for me.   When I took rotations with the legendary Bevra Hahn, who did not like me as I occasionally left her late afternoon rounds to go to my moonlighting job, I got hooked back into rheumatology.  The fellowship programs I chose to seek were narrow and pretty high powered: UCSF, Hopkins, Barnes and Michigan.  I got little love after visiting UCSF and Hopkins, and Barnes’ young new chief John P. Atkinson (with whom I am still friends) said he would not be able to offer me a slot.  I had been quite the bad boy at Barnes and the reputation stuck.  Only dear old Giles G. Bole took a chance on me at U of M and the relationship became a solid and fulfilling one.  They thought I was terrific (I was) and offered me a job midway through my second fellowship year.  As the young stud steeped in the fires of Barnes, I took on everything.  Rheumatologists are called in not only when a patient with one of their established diseases lands in the hospital, but also when a particular patient has a complex array of symptoms and signs that just might have an autoimmune basis.  I quickly developed a reputation as the guy who didn’t believe any of the other consultants.  But our patients were different!  It led to some clashes with the powers that be which were to punctuate the rest of my career.  I learned to lighten up and realize that the effective consultant could persuade others to see his, correct, point of view.  The practice of rheumatology became much easier in the late 90s with the advent of biologicals.   These drugs actually worked great, and I wouldn’t have to spend each visit deciding which inflamed joints to inject.  Some of the joy of rheumatology began to fade in the last decade or so, as the practice became increasingly corporatized.  Large committees began to decide what constitutes a particular disease, and how best to treat it.  Protocols deigned what to do with our patients, and the satisfaction of figuring things out independently and devising something clever to do about it faded.  With protocols came overseers to see that you adhered to them, and who likes someone looking over your shoulder?  So while I was sad to be forced to give up my practice in 2019, I really wasn’t having that much fun anymore and I’m not terribly sad it’s all gone.

Deaths are rare in Rheumatology.  Our patients die with their diseases, not of them.  We docs are blamed for killing them early, with NSAIDs, opioids, and the myriad biologics permitting all manner of weird infections.  On the consult service, we see our share of deaths, mainly inpatients with multisystem diseases who just become overwhelmed.  I came to tears thinking about your questions while preparing dinner.  It helped I was chopping up a big sweet onion at the time (the sauce turned out delicious).  I thought back to patient deaths that hit me.  There have been a bunch, but that of Sylvia Fryer particularly haunts.  She was a middle-aged woman from a small town outside of Jackson who had hepatitis C, before anyone knew what that was, except me.  She had a rare complication of hepatitis C infection called cryoglobulinemia, in which an excessive immune response to the virus includes some immune proteins that tend to glom up at lower temperatures.  The proteins deposit in critical organs and cause all sorts of trouble.   I was able to bring Sylvia along for a while, but things inevitably progressed.   I recall sitting at her bedside in the ICU, she on a ventilator, me holding her hand thinking how unfair it was she was dying, as she’d fought so hard.  Current hepatitis C drugs would probably have cured her.  Maybe that’s my best death story.  I think I’ve killed only one patient with opioids, one middle aged guy with hepatitis C and joint pain whom I’d strung along with huge amounts of opioids who just stopped showing up one day.  A couple years ago I learned of the sudden death of an older patient with bad rheumatoid arthritis for whom I’d been prescribing a modest chronic dose of opioids.  She had other reasons to keel over.  Those deaths may be more troubling than the ones in hospital, where someone somewhere might think you had a hand.  I realize I entered this profession with a license to kill, but I didn’t intend to apply it.  As Hippocrates wrote Primum non nocere      

Michigan COVID-19 Update

The Department of Internal Medicine (my home) at the University of Michigan Medical Center devoted its weekly Grand Rounds to a discussion of the first 30 days of COVID-19 here.

Just last week, the hospital opened a new ward – the 32 bed RICU (Regional Infectious Containment Unit) – devoted to the care of COVID-19 patients, featuring negative pressure to keep materials from spreading beyond the unit.  The unit quickly filled and now encompasses 50 beds, devoted now only to the most serious cases.  The second patient ever encountered was a middle aged woman with lupus, Sjögren’s and preexisting lung disease who was already on Plaquenil plus some more potent immunosuppression.  In anticipation of compassionate use of the experimental antiviral remdesivir, she had her Plaquenil held, and she became rapidly worse, only to have the Plaquenil reinstated.  Despite continued Plaquenil, remdesivir, Actemra and steroids she remains on the ventilator at maximum support, still alive.

One huge leap forward was getting our own high throughput lab testing for coronavirus, not having to rely on sendouts or the low capacity CDC test.

Treatments pretty much follow the guidelines I’ve shared with you out of China on my blogs.  They do start Plaquenil a little higher, 600 mg twice daily vs. 400 mg, but otherwise dose it the same.  One new drug to creep onto the list of options is nitazoxanide (Alinia), approved by the FDA in 2004 for treatment of protozoal infections (cryptosporidiosis and giardia, both water borne buggers that can cause diarrhea, with crypto having become a particular problem in HIV patients).  It works by interfering with the pyruvate ferredoxin/flavodoxin oxidoreductase dependent electron transfer reaction, which is essential to anaerobic energy metabolism.  As such, it markedly modulates the survival, growth, and proliferation of a range of extracellular and intracellular protozoa, helminths, anaerobic and microaerophilic bacteria, in addition to viruses.  Nitazoxanide exhibited activity against the MERS coronavirus in the test tube, but there have been no reports of its clinical efficacy.

Three clinical trials are in progress at U of M.  Two employ remdesivir, one for moderate illness and one for severe illness.  Another employs sarlilumab (Kevzara), an anti-interleukin-6 monoclonal antibody, very similar to tocilizumab (Actemra), which I’ve discussed before.

So we plug along at U of M, looking to face a flood of new cases over the next 2 weeks.  They haven’t yet begun trying to coax the retirees back into harness, at least yet.  Stay tuned.

drugs

actually, those 95 authors did provide a table of the drugs they’ve tested which show promise against coronavirus. Here it is. I fear the structure of the table has not survived the paste. I refer the interested reader back to the URL in my last blog post. Take it as a demonstration of the amazing array of stuff out that that may be able to corral our annoying little visitor.

Table 1a. Literature-deriveda drugs and reagents that modulate SARS-Cov-2 interactors.

Compound Name

Compound Structure

Human Gene

Viral Bait              Drug Status

Activity (nM)

Silmitasertib106,107

CSNK2A2             N

Approved (Cancer)

CK2 inhibitor IC50 = 1

TMCB108                                                           CSNK2A2            N

Pre-clinical

Multi-targeted protein kinase inhibitor

Ki  = 21

Apicidin109                                                            HDAC2            Nsp5             Pre-clinical            HDAC inhibitor IC50 = 120

Valproic Acid110,111                                                      HDAC2            Nsp5

Approved (CNS

diseases, Cancer)

HDAC2 inhibitor Ki = 5

Bafilomycin A1112                                                     ATP6AP1          Nsp6             Pre-clinical           ATPase inhibitor IC50 = 100

E-52862113                                                          SIGMAR1          Nsp6            Clinical Trial        Sigma 1 antagonist IC50 = 17

PD-144418114                                                       SIGMAR1          Nsp6             Pre-clinical         Sigma 1 antagonist Ki = 0.8

RS-PPCC115                                                        SIGMAR1          Nsp6             Pre-clinical           Sigma 1 agonist Ki = 1.5

PB28

SIGMAR1

116                                                                                           TMEM97

Nsp6             Pre-clinical Orf9c

Sigma 1/2 modulator IC50 = 15

117                                                                                   SIGMAR1

Nsp6

Approved

Sigma 1/2 modulator

Haloperidol

TMEM97

Orf9c

(CNS

diseases)

Ki = 2-12

Entacapone

118,119

COMT             Nsp7

Approved (Parkinson’s disease)

COMT inhibitor IC50 = 151

Indomethacin120                                                       PTGES2           Nsp7

Approved (Inflammation, Pain)

Prostaglandin E2 synthase inhibitor IC50 = 750

Metformin121                                                          NDUFs            Nsp7

Orf9c

Approved (Diabetes)

MRC 1 inhibitor (indirect)

Ponatinib122                                                            RIPK1           Nsp12             Approved (Cancer)

RIPK1 inhibitor IC50 = 12

H-89123                                                             PRKACA         Nsp13            Pre-clinical

Protein kinase A inhibitor

KD  = 48

Merimepodib124                                                       IMPDH2          Nsp14           Clinical Trial           IMPDH inhibitor Ki = 10

Migalastat

125

α-Gal inhibitor IC50 = 40

Mycophenolic acid

126

IMPDH inhibitor IC50 = 20

  GLA   Nsp14 Approved (Fabry     disease)   IMPDH2   Nsp14 Approved (Organ     rejection)    

Ribavirin127                                                           IMPDH2          Nsp14             Approved (Viral infection)

IMPDH inhibitor IC50 = 100-250

XL413128                                                             DNMT1            Orf8             Clinical Trial            CDC7 inhibitor IC50 = 3.4

CCT 365623129                                                           LOX               Orf8

Pre-clinical

LOXL2 inhibitor IC50 = 1500

Midostaurin130                                                       MARK2/3          Orf9b              Approved (Cancer)

Protein kinase inhibitor MARK1

KD = 100 MARK3 KD = 23

Ruxolitinib

131

MARK2/3          Orf9b

Approved (Myelofibrosis)

Protein kinase inhibitor MARK1

KD = 660 MARK3

KD > 10000

ZINC1775962367132                                                   DCTPP1          Orf9b             Pre-clinical

ZINC4326719133                                                      DCTPP1          Orf9b             Pre-clinical

ZINC4511851134                                                      DCTPP1          Orf9b             Pre-clinical

dCTPase inhibitor IC50 = 47

DCTPP1 inhibitor IC50 = 19

dCTPase inhibitor IC50 = 20

ZINC95559591

135                                                                                 MARK3

TBK1

Orf9b            Pre-clinical Nsp13

Protein kinase inhibitor MARK3 IC50 = 12

TBK1 IC50 = 6

AC-55541136                                                           F2RL1            Orf9c             Pre-clinical

AZ8838137                                                             F2RL1            Orf9c             Pre-clinical

PAR agonist pEC50 = 6.7

PAR antagonist IC50 = 344

Daunorubicin

138

ABCC1           Orf9c

Approved (Cancer)

Topoisomerase inhibitor

Ki  = 70

GB110139                                                              F2RL1            Orf9c             Pre-clinical              PAR2 agonist EC50 = 280

S-verapamil140

ABCC1           Orf9c

Approved (Hypertension)

Ca2+ channel inhibitor and drug efflux transporter inhibitor

Ki = 113

AZ3451137                                                             F2RL1            Orf9c             Pre-clinical

PAR2 negative allosteric modulator pKD = 15

  1. These drug-target associations are drawn from chemoinformatic searches of the literature, drawing on databases such as ChEMBL141, ZINC142 and IUPHAR/BPS Guide to Pharmacology143

Table 1b. Expert-identifieda drugs and reagents that modulate SARS-CoV-2 interactors.

Compound Name

Compound Structure

Human Gene/ Process

Viral Bait

Drug Status

Activity (nM)

ABBV-74468                                                                                                           BRD2/4                E          Clinical Trial

  Degrades BRD BRD2/4 E Pre-clinical proteins       IC50 <       10000    

dBET6144

BRD

inhibitor KD = 2.1

MZ1145                                                                                                                 BRD2/4                E           Pre-clinical

  BRD2/4 inhibitor BRD2 BRD2/4 E Clinical Trial IC50 = 25       BRD4       IC50 = 18    

CPI-0610146

Degrades BRD

proteins KD = 120-

228

Sapanisertib87,147                                                                                                       LARP1                N          Clinical Trial

mTOR

inhibitor IC50 = 1

Rapamycin87,148

LARP1 FKBP15 FKBP7/10

N

Nsp2 Orf8

Approved (Organ rejection)

mTOR

inhibitor (with FKBP) IC50 = 2.0

149                                                                                                           EIF4E2/H            Nsp2        Clinical Trial          EIF4a

Zotatifin

inhibitor IC50 = 1.5

Verdinexor

NUPs

150                                                                                                            RAE1

Nsp4 Nsp9 Orf6

Clinical Trial

XPO1

nuclear export inhibitor IC50 = 960

Chloroquine151                                                                                                      SIGMAR1           Nsp6

Approved (Malaria)

Sigma 1 binder Ki = 100

Dabrafenib152                                                                                                            NEK9               Nsp9          Approved (Cancer)

NEK9

inhibitor IC50 = 1

 CEP250 inhibitor
(with
WDB002CEP250Nsp13Clinical TrialFKBP)
    Kd = 0.29
      PPIA-
    IMPDH2
    modulator
Sanglifehrin A153IMPDH2Nsp14Pre-clinicalPPIA KD =
    0.2
    IDPDH2
    Binding

EC50 =

11.5 (with PPIA)

FK-506

154                                                                                                              FKBP7              Orf8

FKBP10

Approved (Organ rejection)

FKBP

binder

Pevonedistat67                                                                                                           CUL2              Orf10       Clinical Trial

Ternatin 4155                                                                                                       Translation                           Pre-clinical

NEDD8-

activating enzyme inhibitor IC50 = 4.7

eEF1A

inhibitor IC50 = 71

4E2RCat

58                                                                                                         Translation                           Pre-clinical

eIF4E/G PPI

inhibitor IC50 = 13500

Tomivosertib156,157                                                                                                 Translation                          Clinical Trial

MNK1/2

inhibitor IC50 = 2.4

Viral

158

Pre-clinical

Cyclophilin inhibitor

Compound 2

Transcription

KD = 24

Compound 10159                                                                                                          Viral

Transcription

PS306130                                                                                                           ER protein

processing

Pre-clinical

Pre-clinical

PI4K-IIIβ

inhibitor IC50 = 3.4

Sec61 inhibitor IC50 = 20-

500

IHVR-19029160,161

ER protein                          Clinical Trial processing

Antiviral activity

IC50 = 1200

Captopril

162

Cell Entry

Approved (Hypertension)

ACE

inhibitor Ki = 3

Lisinopril163

Cell Entry

Approved (Hypertension)

ACE

inhibitor Ki = 0.27

Camostat164,165                                                                                                      Cell Entry                             Approved (Pancreatitis)

Nafamostat164,166                                                                                                    Cell Entry                             Approved (Anticoagulant)

Serine protease 1 inhibitor IC50 < 1000

Serine protease 1 inhibitor IC50 = 100

Chloram-

phenicol167                                                                                                       Mitochondrial

ribosome

Approved (Bacterial infection)

Mito- chondrial ribosome inhibitor IC50 = 7400

Tigecycline168                                                                                                    Mitochondrial

ribosome

Approved (Bacterial infection)

Mito- chondrial ribosome inhibitor IC50 = 3300

Linezolid169

Mitochondrial ribosome

Approved (Bacterial infection)

Mito- chondrial ribosome inhibitor IC50 = 16000

a. These molecules derive from expert analysis of human protein interactors of SARS-Co-V2 and reagents and drugs that modulate them; not readily available from the chemoinformatically-searchable literature.

Look out Mr. Corona, here comes Science

The latest piece of COVID-19 information circulating in my Division Monday was a pre-print of a manuscript submitted to Nature (perhaps the world’s most highly regarded scientific journal) regarding the results of a molecular tour de force investigation of COVID-19’s protein components and the human proteins with which they interact, examining properties of existing drugs which might disturb those interactions and thereby cripple the virus.  The paper has not finished going through the peer-review process, so the final “official” report could end up looking slightly different.

There are 95 authors listed in the masthead, almost all with various UCSF associations, but Paris, Seattle and New York City are also represented.

They started by taking the virus apart.  That 30,000 base pair RNA genome has 14 ”open reading frames” you could call genes which direct synthesis  of 14 globs of protein which manage to self digest and reassemble themselves into 16 non-structural proteins (which direct the virus’ dirty work on the cell), 4 structural proteins (which the virus presents to the world in its “crown”) and 9 “accessory factors” which have a mysterious role.  They managed to clone all 29 of these into plasmids (DNA taken up by cells and expressed) and gotten cultured human cells to crank out good amounts of each one.  They could verify each product was the real deal  in 27 instances.  Then they mixed them up with proteins from human cells from 16 different organs coronavirus is known to infect.  The identified 332 interactions between different virus proteins and different cell materials.  Here is where the rubber was meeting the road when coronavirus sets up shop.  Interfere with those interactions and maybe you’ve got a chance.  To be more sure that the human proteins interacting in the test tube were relevant, they checked the evolutionary profiles of the proteins, judging that proteins more stable across evolution would more likely be real viral targets.  The 332 looked like they filled this bill.  They characterized the nature of the various interactions, finding interactions related to lipid modifications and vesicle trafficking (the virus moves in and out of intracellular vesicles and appropriates the cell’s lipids for its own coat), interactions with multiple innate immune pathways (the defenses our cells have at the ready regardless of identity of invader), interactions with a Cullin ubiquitin ligase complex (don’t ask me), and interaction with bromodomain proteins (important in regulating gene transcription).

Then came the “wow” part (if the molecular virology thusfar didn’t tickle you as much as it did this old virologist).  They sought to find molecules that would target human proteins in the SARS-CoV-2 “interactome” (a term I think they just coined, but a nice way to describe whatever two-backed beast that formed whenever bits of corona and human came together).  Drugs are no longer some sort of mystery potion drawn from the doctor’s bag.  Molecular structures are known, and at least putative mechanisms exist.  And they’re all catalogued.   Chemoinformatics, they call it.   They found 62 drugs that could conceivably modulate the virus-human interactions they’d characterized.  Some are still pre-clinical.  But some old war horses showed up, including Depekote (valproic acid), an anti-seizure drug, Haldol (haloperidol), an anti-psychotic (which we might all need if this goes on much longer), chloroquine (Aralen) of course, CellCept (mycophenolic acid, an immune suppressant and anti-transplant drug), ribavirin (already in the Chinese guideline), and even metformin (a common diabetes drug).  As I type this, I plan to make you a full table, which the 95 authors did not.  I’m going to save that for a later post so I can get this out.  There’s not a lot of room in Nature.  Not a problem here, but I have your attention span to consider.

Please don’t go asking your doctor for any of these drugs.   That’s happening badly enough with Plaquenil already.   But realize this sort of high-tech investigation is going on and could rapidly lead to new treatments for our current plague.  Trust that the nerds have their noses to the grindstone and good stuff is bound to turn up.

Hands off My Plaquenil?

My young friend Jason, research superstar and damn fine doctor to boot (see “shameless plugs” 2/22/20), is married to Sara, a science writer.  Sara has spent the last little while researching how the patients Jason and I look after see the new interest in one of their mainstay drugs – Plaquenil (hydroxychloroquine) – as a possible treatment for COVID-19.  Several of my recent posts have devoted space to that, but Sara examines the point of view of those who feel threatened by this interest.   I take the point of view that ramped up production should meet the needs of both rheumatology and coronavirus patients.  Until now, the market for hydroxychloroquine was pretty stagnant and manufacturers had no reason to produce more.

Her article appears in Undark, an interesting non-profit, editorially independent digital magazine exploring the intersection of science and society, based in Cambridge Mass, where there’s a lot of that about (M.I.T., Harvard and all that).  Here it is: https://undark.org/2020/03/22/hydroxychloroquine-lupus-covid19-coronavirus/

Treating COVID-19

On March 4th, in a 9 page (once translated) document, the Chinese Health and Public Health Ministry put out their 6th revision of its Guideline on Novel Coronavirus Disease (COVID-19) Diagnosis and Treatment.  I put the full guidelines on my blog Thursday. 

Only 2 small sections mentioned anything about drug treatment.  But they have found some things that seem to work, at least for some cases.

First, lets look again at the treatment recommendations, then I’ll explain each drug to the best of my ability.

  1. Some recommended anti-viral treatments to try (there is currently no proven anti-viral for this virus.  The most promising one according to WHO officials is Remdesivir from Gilead):
  1. Alfa-interferon (5,000,000 U or similar dose, add 2ml sterile water) nebulized twice daily for adults, can be given in combination with any treatment below.
  • Kaletra (lopinavir/ritonavir) 200mg/50mg 2 tablets twice daily for adults, for up to 10 days (monitor for GI side effect, such as nausea, vomiting, diarrhea, and elevated liver enzymes, QT prolongation – an electrocardiogram feature)
  • Ribavirin (recommended use in combination with Alpha-Interferon or Kaletra): 500mg IV twice daily-three times daily for adults, for up to 10 days
  • Chloroquine Phosphate 500mg twice daily for adults >50kg; 500mg twice daily for Day 1 and 2, then 500mg qd for Day 3-7 for adults<=50kg; up to 10 days
  • (Gilead’s remdesivir is currently under clinical study in China, so it’s not included in this guideline.)
  1. Close observation of side effect of each drug; do not recommend using >=3 antiviral treatments at one time.

Remsdesivir was developed by Gilead to treat Ebola, a filovirus that like COVID-19 has an RNA genome, but is smaller, both physically (80%) and by length of genome (2/3ds), plus its RNA is a negative strand so it must be duplicated before taking over the host cell.  And Ebola is not as hardy as the coronaviruses, as it must ride in the host’s bodily fluids to be transmitted.  ­­Remsdesivir works by acting as a nucleotide analog of adenosine (remember the 4 letters of the language of God: ATGC https://www.amazon.com/Language-God-Scientist-Presents-Evidence/dp/1416542744/ref=sr_1_1?crid=149QA07AXVVM1&keywords=the+language+of+god&qid=1584884234&sprefix=the+langua%2Caps%2C179&sr=8-1), taken up into the new RNA being made by the virus which can not then be translated and direct the manufacture of new virus proteins, a slick little chemical vascectomy for Mr. Corona.  In the lab, it’s been shown to suppress the replication of a number of RNA viruses, including the coronaviruses responsible for SARS and MERS.  In late January 2020, remdesivir was administered to the first US patient to be confirmed to be infected by SARS-CoV-2, in Snohomish County, Washington, for “compassionate use” after he progressed to pneumonia. While no broad conclusions were made based on the single treatment, the patient’s condition improved dramatically the next day, and he was eventually discharged https://www.nejm.org/doi/10.1056/NEJMoa2001191.  Clinical trials of the drug in active COVID-19 infection are underway in China and as a 50 site multicenter study coordinated out of the University of  Nebraska https://www.nih.gov/news-events/news-releases/nih-clinical-trial-remdesivir-treat-covid-19-begins, https://clinicaltrials.gov/ct2/show/NCT04280705.  In this trial, patients in the treatment arm will receive 200mg remsdesivir IV on day one then 100 mg IV daily to complete a 10 day course. Other trials are set to commence in Asia, and may be ongoing already.  Some will test a 5 days course.  Gilead and the investigators expect usable outcomes data in April.  Market analysists who study such things expect Gilead to price remsdesivir at $900-$1000 per course https://www.biopharmadive.com/news/coronavirus-remdesivir-gilead-antiviral-drug-covid-19/573261/.

Alfa-interferon is a much older therapeutic agent.  Not really a “drug”, it is coaxed out of cultured E.coli and purified to look just like the human alfa-interferon produced in response to viral infections.  There are three different interferon protein classes, alpha, beta and gamma.  Alpha interferons are produced by fibroblasts and monocytes exposed to viruses and viral components, boosting the activity of immune cells around them.  Beta and gamma classes come out in response to other of the host’s immune signalling proteins (cytokines).  One of the reasons you don’t get sick again right after recovering from a viral infection is that your circulating interferon levels are sky high. Over 40 years ago rheumatologists in Finland administered interferon to 6 patients with rheumatoid arthritis, seeing encouraging results.  They were trying to mimic the effect seen after a measles infection where patients often transiently improved.  Larger controlled trials could not confirm the positive effects seen, and the agent never entered the anti-rheumatic armamentarium, except for some promising observations with Behçet’s disease.  However, its anti-proliferative and anti-viral properties have been directed at: hairy cell leukemia, malignant melanoma, AIDS-related Kaposi’s sarcoma, follicular non-Hodgkin’s lymphoma, and condyloma acuminate (all FDA approved) and also chronic myelogenous leukemia (CML), renal cell carcinoma, neuroendocrine tumors (carcinoid syndrome; islet cell tumor), multiple myeloma, non-follicular non-Hodgkin’s lymphoma, cutaneous T-cell lymphoma, desmoid tumor, polycythemia vera, essential thrombocytopenia, and idiopathic thrombocytopenia purpura.  It was the first agent to have any success against hepatitis C, and when ribavirin came along, combination therapy of ribavirin with interferon alpha was standard of care.  During courses of treatment, some patients with presexisting autoimmune diseases saw them flare, and new autoimmune diseases emerged in others.  Flu-like symptoms are common after injection. The agent can now be given in nebulized form, although the vehicle used can sometimes cause cough, likely limiting its use in patients already having respiratory difficulties.

Kaletra (lopinavir/ritonavir) 200mg/50mg was developed for treatment of HIV, approved by the FDA in 2000.  Both lopinavir and ritonavir inhibit HIV’s protease, an important molecule it makes the invaded cell synthesize early in infection.  The 9 genes of HIV direct manufacture of 15 different proteins.  The protease is responsible for modifying all the other HIV proteins being manufactured that will make up the virus’s coat, blast exit of new viruses from the cell, and mediate entry into new cells.  The two drugs are given in combination because ritonavir increase the concentration of lopinavir in the body.  Neither drug given alone can achieve effective levels with oral dosing.  There are several other drugs of this class, including ritonavir (Norvir), nelfinavir (Viracept) and saquinavir (Invirase, Fortovase).  Together, these drugs have revolutionized the treatment of HIV-1, converting it from a dreaded killer to a manageable chronic long term disease.  Kaletra (and the rest of the protease inhibitors) are expensive, with AbbVie offering a savings program worth $400/month to eligible patients.

Ribavirin is an old drug, patented in 1971 and approved for medical use in 1986 to treat hepatitis C.  It interferes with viral nucleic acid synthesis through molecular mimicry.  Once phosphorylated in the cell, it mimics inosine 5′-monophosphate, which is critical in making one of those “language of God” letters: G (guanine), and inhibits the enzyme Inosine-5′-monophosphate dehydrogenase (IMPDH).  RNA synthesis slows, and ribivarin monophosphate can be incorporated into new viral RNA leading to defective genes.  Resistance can develop if the drug is given alone, so it is always given with interferon.  While effective, it has largely been supplanted by newer medications (elbasvir/grazoprevir (Zepatier) glecaprevir/pibrentasvir (Mavyret), sofosbuvir/ledipasvir (Harvoni), sofosbuvir/velpatasvir (Epclusa).

I have just put on my white coat, complete with stethoscope in pocket, so I will be writing the rest of this piece with all the medical authority and experience I can muster.

The remaining drug is this first discussion of drug treatments in the Chinese Guideline is chlororquine phosphate (Aralen).  Although considered a product of an intensive U.S. research effort to develop an antimalarial alternative to quinacrine (Atabrine) during World War II, German producers of Atabrine had produced chloroquine phosphate in 1934 but shelved it as too toxic.  GIs in the Pacific disliked that Atabrine turned their skin yellow, and especially didn’t like it when Tokyo Rose told them it would make them sterile (untrue).  Noncompliance was a problem and many GIs died of malaria because they had not taken their Atabrine.  Aralen was patented in 1941 and GIs were taking this non-yellowing but effective drug by 1943.  The Journal of the American Chemical Society describing details of synthesis of Aralen was kept by the Defense Research Council from being published till after the war.  The drug’s antirheumatic effects were noticed in patients with rheumatoid arthritis and lupus who happened to take the drug for malaria prophylaxis.  Aralen was highly effective for malaria for a while, but resistant strains of Plasmodium  began to emerge by the mid-late 50s.   Hydroxychloroquine (Plaquenil) was approved for malaria in 1955, and was better tolerated but no more effective against malaria.  Plaquenil became the preferred antirheumatic antimalarial, and many practicing rheumatologists now worry that the push for use of Plaquenil for coronavirus treatment will deprive their patients of an important drug.  I have covered use of antimalarials for coronavirus already in my blog (“My Corona” 3/14/20, “Plaquenil for Corona” 3/19/20, and “How Plaquenil may work” 3/20/20).

But wait there’s more!  Later in the guideline, under “Treatment for Severe and Critical Disease”, is this section:

Immunotherapy: for patients with bilateral diffuse pulmonary infiltrates, or patients in severe to critical stages, if blood IL-6 level is elevated, can try tocilizumab.  Initial dosage of tocilizumab is at 4-8mg/kg.  Recommended initial dosage is at 400mg, diluted by 0.9%NS to 100ml, infused over >1hr.  Patients without significant improvement after the initial dose, can have a second dose after 12 hours.  Total dosage should not exceed twice total, and single dosage should not exceed 800mg.  Watch for allergic reaction.  Patients with TB or other active infection should not use tocilizumab.

Tocilizumab (Actemra) is a humanized (made in animal cells then having the animal traces chopped off) monoclonal antibody to the interleukin-6 receptor.  Interleukin-6 is one of the main cytokines pumped out of the liver in acute inflammation, produces a number of negative  downstream effects when it binds to its receptor, an interaction prevented by Actemra.  It is highly effective in rheumatoid arthritis, and was improved for use there in 2014. More recently, it has been shown be effective in giant cell arteritis (temporal arteritis) an inflammatory disease affecting larger arteries, primarily of the head and neck, in older people.  It has found some use in “cytokine storm” an inflammatory emergency that can be seen in cancer patients that can occur when chemotherapy is so effective that there is extensive death of the cancer and a huge inflammatory response mounted against it.  Something similar can occur in the lungs of patients infected with COVID-19.  Actually, it is very old news that severe lung damage in virus infections is mediated more by the body’s immune response to the infection and dying lung tissue than to the infection itself.  This was seen in the lungs of people dying of pneumonia during the influenza pandemic of 1918.   With IL-6 being a prime mediator of this response, the reasoning goes that blocking this response might minimize and even reverse the damage.  The dosing regimen described is different form that used for RA or GCA, where the agent is infused every four weeks.

The Guideline also mentions giving high doses of prednisone to patients in respiratory distress, which happens all the time in medicine anyway.

So those are the weapons the Chinese are employing in the fight against COVID-19.  With the already wide distribution of this Guideline, no doubt some combinations of these treatments are being used in American hospitals now.  The story that’s going to break first is the Plaquenil/Aralen thing.  The FDA is front burner on at least one of them.  The winner may be the one whose manufacturer can turn up the synthesis vats fastest.  

I hope you readers take away some optimism that help is not only on the way, it’s actually already here.  All of these drugs have some undesirable side effects long term, proving again it’s not nice to fool mother nature.  But all these are for a very short term course.  And let’s pray we can use that term to describe the remaining life of COVID-19

How Plaquenil May Work

I struggled for 36 years in Rheumatology to figure out how Plaquenil works in our diseases, and never did.  But I think I might understand, at least in part, how it’s working in its new role as our savior from Mr. coronavirus.

It’s just a matter of simple chemistry.  OHC (hydroxychloroquine: Plaquenil) accumulates in acidic intracellular organelles, including the Golgi where coronavirus replicate, and does its diprotic base thing to raise the ambient pH, thus dousing our unwelcome viral intruders with Drano.

from a 16 year old text:

HCQ and chloroquine are aromatic two-ringed 4-amino quinolone compounds; quinacrine has an additional aromatic ring with a methoxy group (Fig. 42.5 ). All three compounds are weak diprotic bases, a property that facilitates intracellular accumulation of the compounds in acidic organelles. At neutral pH of serum and interstitial fluids, antimalarials are uncharged and pass freely across cell membranes (295 ). Within the mildly acidic milieu of intracellular vesicles, the compounds become protonated and no longer freely diffuse across organelle membranes. The resulting partition gradient for uncharged drug may lead to over 100-fold excess concentration of drug within acidic vesicles (296 ). Increases in the pH of intracellular vesicles within malarial parasites resulting in impaired enzymatic breakdown of hemoglobin nutrients and impaired assembly and function of malarial proteins constitute proposed antiparasitic mechanisms of antimalarial efficacy.

From: Chatham WW.  Traditional Disease-Modifying Antirheumatic Drugs: Gold Compounds D-Penicillamine Sulfasalazine and Antimalarials, in Arthritis and Allied Conditions: A Textbook of Rheumatology, WJ Koopman and LW Moreland, Editors.  Fifteenth edition.  2004, Lippincott Williams & Wilkins: Baltimore.  pp 280-309